Data preparation

Download sample datasets

sample datasets - md5: 45a48572f5ffd00dd6e6d79e3ad495d4（Species：mouse）

wget

wget -c -O demo_data.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/sgarc_demo/rawdata/demo_data.tar.gz"
# decompress
tar -zxf demo_data.tar.gz

curl

curl -C - -o demo_data.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/sgarc_demo/rawdata/demo_data.tar.gz"
# decompress
tar -zxf demo_data.tar.gz

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Download reference genome

Download-human-reference-GRCh38 - md5: a9ce266ead3d89bc0aa77cfa646ca309
Download-mouse-reference-GRCm38 - md5: c4f2244f1d0560d5d3b4c71da06fd08f

wget

# human
wget -c -O refdata-arc-GRCh38.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/sgarc_demo/reference/refdata-arc-GRCh38.tar.gz"
# mouse
wget -c -O refdata-arc-GRCm38.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/sgarc_demo/reference/refdata-arc-GRCm38.tar.gz"
# decompress
tar -zxvf refdata-arc-GRCh38.tar.gz

curl

# human
curl -C - -o refdata-arc-GRCh38.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/sgarc_demo/reference/refdata-arc-GRCh38.tar.gz"
# mouse
curl -C - -o refdata-arc-GRCm38.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/sgarc_demo/reference/refdata-arc-GRCm38.tar.gz"
# decompress
tar -zxvf refdata-arc-GRCh38.tar.gz

The assembly of the reference genome refers to How to build reference genome?